BiologyNEB 2076 (old course)

Describe the structure of DNA. How is DNA replicated?

5

Answer

Structure of DNA

DNA (Deoxyribonucleic Acid) is a double-stranded helical molecule that carries genetic information. Its structure consists of three main components:

  1. Phosphate Group: Forms the backbone of the DNA strand, providing structural stability.
  2. Deoxyribose Sugar: A five-carbon sugar that links phosphate groups via phosphodiester bonds, forming the sugar-phosphate backbone.
  3. Nitrogenous Bases: Four types of bases are attached to the sugar:
    • Purines: Adenine (A) and Guanine (G) (double-ring structure).
    • Pyrimidines: Thymine (T) and Cytosine (C) (single-ring structure). The two strands are held together by hydrogen bonds between complementary bases:
    • Adenine (A) pairs with Thymine (T) via two hydrogen bonds.
    • Cytosine (C) pairs with Guanine (G) via three hydrogen bonds. The strands run antiparallel (one 5' → 3' and the other 3' → 5').

The double-helix structure was proposed by James Watson and Francis Crick (1953), based on X-ray crystallography data by Rosalind Franklin.


DNA Replication

DNA replication is a semi-conservative process where each original strand serves as a template for a new complementary strand, resulting in two identical DNA molecules. It occurs during the S-phase of the cell cycle and involves three main steps:

1. Initiation

  • Helicase unwinds the DNA double helix, breaking hydrogen bonds between bases, forming a replication fork.
  • Single-Strand Binding Proteins (SSBs) stabilize the unwound strands.
  • Topoisomerase relieves supercoiling ahead of the replication fork.

2. Elongation

  • DNA Polymerase III synthesizes new DNA strands in the 5' → 3' direction (only).
    • On the leading strand, synthesis is continuous.
    • On the lagging strand, synthesis is discontinuous, forming Okazaki fragments (short DNA segments).
  • Primase lays down a short RNA primer to initiate DNA synthesis.
  • DNA Polymerase I removes RNA primers and fills gaps with DNA nucleotides.
  • Ligase seals the gaps between Okazaki fragments via phosphodiester bonds.

3. Termination

  • In prokaryotes, replication ends at specific termination sites.
  • In eukaryotes, multiple replication forks work simultaneously, and telomerase extends telomeres to prevent chromosome shortening.

Key Enzymes Involved:

Enzyme Function
Helicase Unwinds DNA double helix
DNA Polymerase III Synthesizes new DNA strands (main enzyme)
Primase Synthesizes RNA primers
DNA Polymerase I Removes RNA primers and fills gaps
Ligase Joins Okazaki fragments via phosphodiester bonds
Topoisomerase Relieves supercoiling ahead of replication fork

DNA replication ensures genetic fidelity with high accuracy, though errors (mutations) may occur and are corrected by proofreading mechanisms of DNA polymerase.

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